1. Al-Zahery N., Semino O., Benuzzi G., Magri C., Passarino G., Torroni A. and Santachiara- Benerecetti AS. (2011)Y-chromosome and mtDNA polymorphisms in Iraq, a crossroad of the early human dispersal and of post-Neolithic migrations. Mol Phylogenet Evol 28:458-472.
2. Behar D., Metspalu M., Yael B., Naama KM., Bayazit Y., Ariella G., Shay T., Sahakyan H and Bahmanimehr A.( 2013) No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews. Human Biology Open Access Pre-Prints Paper 41. 2013; http://digitalcommons.wayne.edu/humbiol_preprints/41.
3. Cauvin J. (2000) The Origins of Agriculture in the Near East: a Symbolic Interpretation (English edition). Cambridge University Press. Cambridge, 125pp.
4. Chiaroni J., King R.J., Myres N.M., Henn B.M., Ducourneau A., Mitchell M.J., Boetsch G., Sheikha I., Lin A.A., Nik-Ahd M., Ahmad J., Lattanzi F., Herrera R.J., Ibrahim M.E., Brody A., Semino O., Kivisild T. and Underhill P.A. (2009)The emergence of Y-chromosome haplogroup J1e among Arabic-speaking populations European. Journal of Human Genetics 18: 348–353.
5. Çinnioğlu C., King R., Kivisild T., Kalfoglu E., Atasoy S., Cavalleri G.L. and Lillie A.S. (2004) Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 114:127-148.
6. Derenko M., Malyarchuk B., Bahmanimehr A., Denisova G and Perkova M. (2013) Complete Mitochondrial DNA Diversity in Iranians. PLoS ONE 8(11): e80673. doi:10.1371/journal.pone.0080673.
7. Di Cristofaro J., Pennarun E., Mazie`res S., Myres NM and Lin AA. (2013) Afghan Hindu Kush: Where Eurasian Sub-Continent Gene Flows Converge. PLoS ONE 8(10): e76748. doi:10.1371/journal.pone.0076748.
8. Di Giacomo F., Luca L. O., Popa N., Akar N., Anagnou J. and Banyko R. (2004)Y-chromosomal haplogroup J as a signature of the post-neolithic colonization of Europe. Hum Genet 115:357–371.
9. Excoffier L. and Lischer H.E. (2010) Arlequin suite Ver 3.5: a new series of Programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564-567.
10. Felsenstein J. (2004) PHYLIP (Phylogeny Inference Package) version 3.6, Distributed by the author, Department of Genome Sciences, University of Washington, Seattle.
11. Grugni V., Battaglia V., Hooshiar Kashani B., Parolo S., Al-Zahery N., Achilli A., Olivieri A., Gandini F., Houshmand M., Sanati M., Torroni A. and Semino O. (2012) Ancient Migratory Events in the Middle East: New Clues from the Y-Chromosome Variation of Modern Iranians. PLoS ONE7:7,:e41252.
12. Haber M., Gauguier D., Youhanna S., Patterson N and Moorjani P. (2013) Genome-Wide Diversity in the Levant Reveals Recent Structuring by Culture. PLoS Genet. 9:2; e1003316. doi:10.1371/journal.pgen.1003316.
13. Haber M., Platt D.E., Ashrafian Bonab M., Youhanna S.C and Soria-Hernanz D.F. (2012) Afghanistan’s Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events. PLoS ONE 7:3. e34288. doi:10.1371/journal.pone.0034288.
14. Harlette L., Tenzin G., Regueiro M., Chennakrishnaiah S., Bukhari A., Underhill P.A. Garcia-Bertrand R.L. and Herrera R.J. (2012) Afghanistan from a Y-chromosome perspective. European Journal of Human Genetics 1–8. doi:10.1038/ejhg.2012.59.
15. Karafet T.M., Mendez F.L., Meilerman M.B., Underhill P.A., Zegura S.L. and Hammer M.F. (2008) New binary polymorphisms reshape and increase resolution of the human Y-chromosomal haplogroup tree. Genome Res 18:830-838.
16. Kayser M., Caglia A. and Corach D. (1997) Evaluation of Y-chromosomal STRs: a multicenter study. Int J Legal Med 110:141-149.
17. Kushniarevich A., Sivitskaya L., Danilenko N., Novogrodskii T and Tsybovsky I. (2013) Uniparental Genetic Heritage of Belarusians: Encounter of Rare Middle Eastern Matrilineages with a Central European Mitochondrial DNA Pool. PLoS ONE. 8(6): e66499. doi:10.1371/journal.pone.0066499.
18. Nasidze I., Quinque D., Rahmani M., Alemohamad S. and Stoneking M. (2008) Close genetic relationship between Semitic-speaking and Indo-European-speaking groups in Iran. Ann Hum Genet 72:241-252.
19. Quintana-Murci L., Chaix R., Wells S., Behar D., Sayar H., Scozzari R., Rengo C., Al-Zahery N., Semino O. and Santachiara-Benerecetti A. (2004) Where West meets East: The complex mtDNA landscape of the Southwest and Central Asian corridor. Am J Hum Genet 74:827-845.
20. Quintana-Murci L., Krausz C., Zerjal T., Sayar S.H. and Hammer M.F. (2001) Y-chromosome lineages trace diffusion of people and languages in southwestern Asia. Am J Hum Genet 68:537-42.
21. Rafiee M.R., Sokhansanj A., Naghizadeh M.A. and Farazmand A. (2009) Analysis of Y-Chromosomal Short Tandem Repeat (STR) Polymorphism in an Iranian Sadat Population. Russian Journal of Genetics 45:969-973.
22. Raymond M. and Rousset F. (1995) An exact test for population differentiation. Evolution 49:1280-1283.
23. Renfrew C. (1996) Languages families and the spread of farming. In: Harris DR (ed) The origins and spread of agriculture and pastoralism in Eurasia. Smithsonian Institution Press. Washington DC, USA, 217-224pp.
24. Rootsi S., Myres N.M., ALin A., Jarve M., King R.J., Kutuev I., Cabrera V.M., Khusnutdinova E.K., Varendi K., Sahakyan H., Behar D.M., Khusainova R., Balanovsky O., Balanovska E., Rudan P., Yepiskoposyan L., Bahmanimehr A., Farjadian S. and Villems R. (2012) Distinguishing the co-ancestries of haplogroup G Y-chromosomes in the populations of Europe and the Caucasus. European Journal of Human Genetics 1:8, doi:10.1038/ejhg.2012.86.
25. Seminо O., Magri C., Benuzzi G., Lin A.A., Al-Zahery N., Battaglia V., Maccioni L., Triantaphyllidis C., Shen P., Oefner P.J., Zhivotovsky L.A., King R., Torroni A., Cavalli-Sforza L.L., Underhill P.A. and Santachiara-Benerecetti A.S. (2004) Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area. Am J Hum Genet 74:5, 1023-34.
26. Sengupta S., Zhivotovsky L.A., King R., Mehdi S. Q., Edmonds C.A., Rani U., Thakur C.M., Cavalli-Sforza L. and Underhill P.A. (2006) Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of Central Asian Pastoralists. Am. J. Hum. Genet 78:202–221.
27. Sikora M. J., Colonna V., Xue Y. and Tyler-Smith C. (2013) Modeling the contrasting Neolithic male lineage expansions in Europe and Africa. Investigative Genetics 4:25. doi:10.1186/2041-2223-4-25.
28. Simone R., Mohsen Z. and Nicholas J. C. (2013) Emergence of Agriculture in the Foothills of the Zagros Mountains of Iran. Science. 341: 65; DOI:10.1126/science.1236743
29. Simone R., Zeidi M. and Conard N.J. (2013) Emergence of Agriculture in the Foothills of the Zagros Mountains of Iran. Science 341:65, 64-67.DOI: 10.1126/science.1236743.
30. Underhill P.A., Poznik G.D., Rootsi S., Jarve M., Lin A.A., Wang J., Sahakyan H., Behar D.M., Kushniarevich A., Sarac J., Chaubey G., Grugni V., Semino O., Yepiskoposyan L., Bahmanimehr A., Farjadian S., Balanovsky O., Chiaroni J. and Villems R.(2014)The phylogenetic and geographic structure of Y-chromosome haplogroup R1a. European Journal of Human Genetics. 1:8, 1018-4813/14
31. Wells R.S., Yuldasheva N., Ruzibakiev R., Underhill P.A. and Evseeva I. (2001) The Eurasian heartland: a continental perspective on Y-chromosome diversity. Proc Natl Acad Sci USA 98:10244-9.
32. White P.S., Tatum O.L., Deaven L.L. and Longmire J.L. (1999) New male-specific microsatellite markers from the human Y-chromosome. Genomics 57:433-437.
33. Yunusbayev B., Metspalu M., Jarve M., Kutuev I., Rootsi S., Metspalu E., Behar D.M., Varendi K., Sahakyan H., Khusainova R., Yeppiskoposyan L., Khusnutdinova E.K., Underhill P.A., Kivisild T. and Villems R. (2011)The Caucasus as an asymmetric semi permeable barrier to ancient human migrations. Mol Biol Evol. 29:1,359–365.