Sequence variation in the mtDNA, ND4- tRNALEU, segments of Laudakia nupta (De Filippi, 1843) in Iran

Iranian Journal of Animal Biosystematics

مقاله 5، دوره 11، شماره 2، مرداد 2015، صفحه 157-164   

نوع مقاله: Research articles

شناسه دیجیتال (DOI): 10.22067/ijab.v11i2.45190

نویسندگان

Nasser Sanchooli^{* 1}؛ Hassan Rahimian¹؛ Nasrullah Rastegar-Pouyani²؛ Eskandar Rastegar Pouyani³

¹Faculty of Biological Sciences, College of Science, University of Tehran, Tehran, Iran

²Department of Biology, Faculty of Science, Hakim Sabzevari University, Sabzevar, Iran

³Department of Biology, Faculty of Science, Razi University, Kermanshah, Iran

چکیده

Laudakia nupta, with numerous local populations through Iran, is one of the most widely distributed species of the Genus Laudakia in Iran. Eight hundred and fifty nine bp of mitochondrial ND4-tRNALEUwere sequenced and analyzed for 47 specimens of L. nupta and three specimens of Laudakia melanura, as an out-group taxon. All specimens were collected during field work in Iran. Based on branch pattern of the phylogenetic trees and the amounts of genetic distances within and between major clades recovered in the phylogenetic trees, L. nupta,as a species complex in Iran, should be fundamentally revised taxonomically. Based on our results, two clear geographically isolated clades could be distinguished; one nominate species (L. nupta) distributed through southwest to eastern Iran, and the other consisting of the populations of western foothills of the Zagros Mountains. The morphological analysis would enable us to describe the latter populations as a new species.

کلیدواژه‌ها

Agamidae؛ new entity؛ phylogeny؛ species complex؛ taxonomy

مراجع

Anderson, S.C., 1999. The lizards of Iran. Society for the Study of Amphibians and Reptiles, Ohio, Oxford.

 

Arevalo, E., Davis, S., Sites, J., 1994. Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Systematic Biology 43, 387–418.

 

Baig, K.J., Wagner, P., Ananjeva, N., Böhme, W., 2012. A morphology-based taxonomic revision of Laudakia Gray, 1845 (Squamata: Agamidae). Vertebrate Zoology 62, 213–260.

 

Blanford, W.T., 1876.Eastern Persia. An account of the journeys of the Persian boundary commission 1870-71-72. Vol. II. The zoology and geology. Macmillan and Co., London.

 

Boulenger, G.A., 1885. Catalogue of the lizards in the British Museum (Natural History). Vol. I. Geckonidae, Eublepharidae, Uroplatidae, Pygopodidae, Agamidae. Trustees of the British Museum, London.

 

Cheatsazan, H., Rabani, V., Mahjoorazad, A., Kami, H.G., 2008. Taxonomic status of the yellow-headed agama, L. nupta fusca (Blanford, 1876) (Sauria: Agamidae). Zoology in the Middle East 44, 41–50.

 

Darriba, D., Taboada, G.L., Doallo, R., Posada, D., 2012. JModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9, 772.

 

Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.

Goodman, M., Czelusniak, J., Moore, G.W., Romero-Herrera, A.E., Matsuda, G., 1979. Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Systematic Zoology 28, 132–163.

 

Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95-98.

 

Huelsenbeck, J.P., Ronquist, F., 2001. Mr. Bayes: Bayesian inference of phylogeny. Bioinformatics 17, 754–755.

 

Johns G.C., Avise J.C, 1998. Comparative Summary of Genetic Distances in the Vertebrates from the Mitochondrial Cytochrome b Gene. Molecular Biology and Evolution 15:1481–1490.

 

Khan, M.S., 2006. Amphibians and Reptiles of Pakistan. Krieger Publishing Company, Malabar, Florida.

 

Macey, J.R., Schulte, J.A., Kami, H.G., Ananjeva, N.B., Larson, A., Papenfuss, T.J.,2000. Testing hypotheses for vicariant separation in the agamid lizard Laudakia caucasia from mountain ranges of the Northern Iranian Plateau. Molecular Phylogenetics and Evolution 14, 479–483.

 

Macey, J., Robert, J.A., Schulte, J.A., Ananjeva, N.B., Larson, A., Rastegar-Pouyani, N., Sakhat, M.S.,Papenfuss, T.J., 1998. Phylogenetic Relationships among Agamid Lizards of the Laudakia caucasia Species Group: Testing Hypotheses of Biogeographic Fragmentation and an Area Cladogram for the Iranian Plateau. Molecular Phylogenetics and Evolution 10, 118–131.

 

Mahjoorazad, A., Cheatsazan, H., Kami, H.G.,Rabani, V., 2005. Distribution of the yellow-headed agama, L. nupta fusca (Blanford 1872), in Iran. Zoology in the Middle East 36, 21–26.

 

Mouthereau, F., 2011. Timing of uplift in the Zagros belt/Iranian plateau and accommodation of late Cenozoic Arabia-Eurasia convergence. Geological Magazine 148, 726–738.

 

Pyron, R., Burbrink, F.,Wiens, J., 2013. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evolutionary Biology 13(93), 1-53.

 

Rastegar-Pouyani, E., Eskandarzadeh, N., Darvish, J., 2014. Re-evaluation of the taxonomic status of sand boas of the genus Eryx (Daudin, 1803) (Serpentes: Boidae) in north-eastern Iran using sequences of the mitochondrial genome. Zoology in the Middle East 60, 320–326.

 

Rastegar-Pouyani, E., Rastegar-Pouyani, N., Kazemi-Noureini, S., Joger, U., Wink, M., 2009. Molecular phylogeny of the Eremias persica complex of the Iranian Pateau (Reptilia: Lacertidae), based on mtDNA sequences. Zoological Journal of the Linnean Society 158, 641–660.

 

Rastegar-Pouyani, N.,Nilson, G., 2002. Taxonomy and biogeography of the Iranian species of Laudakia. Zoology in the Middle East 26, 93–122.

 

Rastegar-Pouyani, N., Kami, H.G., Rajabzadeh, M., Shafiei, S., Anderson, S.C., 2008. Annotated checklist of Amphibians and Reptiles of Iran. Iranian Journal of Animal Biosystematics 4, 43–66.

 

Sborshchikov, I.M., Savostin, L.A.,Zonenshan, L.P., 1981. Present plate tectonics between Turkey and Tibet. Tectonophysics 79, 45–73.

 

Silvestro, D., Michalak, I., 2012.RaxML GUI: a graphical front-end for RAxML. Organisms, Diversity and Evolution 12, 335-337.

 

Šmid, J., Moravec, J., Kodym, P., Kratochvil, L., Hosseinian-Yousefkhani, S., Rastegar-Pouyani, E., Frynta, D., 2014.Annotated Checklist and Distribution of The Lizards Of Iran. Zootaxa 3855, 001–097.

 

Smith, M.A., 1935. The fauna of British India, including Ceylon and Burma. Reptilia and Amphibia. Vol. II. Sauria.Taylor and Francis, Ltd. [Reprint Edition 1974, Today and Tomorrow's Printers and Publishers], London.

 

Swofford, D.L., 2001. PAUP*, Phylogenetic Analysis Using Parsimony (*and other Methods), Version 4.0b10. Sinauer Associates, Sunderland.

 

Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., 2013. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution 30, 2725-2729.

 

Thaung, H., Willoughby, T., Pradya, S., Duong, S., Setha, T., Sein, M., Chang, M., Catherine, W., 2009.Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies. BMC Genetics 10, 11.