- Abou Ghanem-Sabanadzovic, N., Sabanadzovic, S., Digiaro, M., & Martelli, G.P. (2005). Complete nucleotide sequence of the RNA-2 of Grapevine deformation and Grapevine Anatolian ringspot viruses. Virus Genes, 30, 335-340. https://doi.org/10.1007/s11262-005-6776-5
- Andrews, S. (2010). FastQC: A quality control tool for high throughput sequence data. Retrieved from http://www.bioinformatics.babraham.ac.uk/projects/fastqc
- Carra, A., Gambino, G., & Schubert, A. (2007). A cetyltrimethylammonium bromide-based method to extract low-molecular-weight RNA from polysaccharide-rich plant tissues. Analytical Biochemistry, 360(2), 318-320. https://doi.org/10.1016/j.ab.2006.09.022
- Cigsar, I., Digiaro, M., Gokalp, K., Abou Ghanem-Sabanadzovic, N., De Stradis, A., Boscia, D., & Martelli, G.P. (2003). Grapevine deformation virus, a novel nepovirus from Turkey. Journal of Plant Pathology, 85(3), 183-191.
- Eichmeier, A., Komínková, M., Komínek, P., & Baránek, M. (2016). Comprehensive virus detection using next generation sequencing in grapevine vascular tissues of plants obtained from the wine regions of Bohemia and Moravia (Czech Republic). PLoS ONE, 11(12), e0167966. https://doi.org/10.1371/journal.pone.0167966
- Elbeaino, T., Digiaro, M., Ghebremeskel, S., & Martelli, G.P. (2012). Grapevine deformation virus: completion of the sequence and evidence on its origin from recombination events between Grapevine fanleaf virus and Arabis mosaic virus. Virus Research, 166(1-2), 136-140. https://doi.org/10.1016/j.virusres.2012.03.011
- Fuchs, M. (2020). Grapevine viruses: a multitude of diverse species with simple but overall poorly adopted management solutions in the vineyard. Journal of Plant Pathology, 102(3), 643-653. https://doi.org/10.1007/s42161-020-00579-2
- Gholampour, Z., Kargar, M., Zakiaghl, M., Siampour, M., Mehrvar, M., & Izadpanah, K. (2017). Dynamics of the population structure and genetic variability within Iranian isolates of grapevine fanleaf virus: evidence for polyphyletic origin. Acta Virologica, 61(3), 324-335. https://doi.org/10.4149/av_2017_311
- Gholampour, Z., & Zakiaghl, M. (2016). Comparison of RNA extraction methods for the identification of Grapevine fan leaf virus. Journal of Iranian Plant Protection Research, 30(1), 127-133. (In Persian). https://doi.org/10.22067/jpp.v30i1.40075
- Gholampour, Z., Zakiaghl, M., Jafarpour, B., & Mehrvar, M. (2015). Identification and prevalence of Grapevine fanleaf virus in Khorasan-Razavi vineyards. Journal of Iranian Plant Protection Research, 29(3), 318-324. (In Persian). https://doi.org/10.22067/jpp.v29i3.27668
- Grassi, F., & De Lorenzis, G. (2021). Back to the origins: Background and perspectives of grapevine domestication. International Journal of Molecular Sciences, 22(9), 4518. https://doi.org/10.3390/ijms22094518
- Hajizadeh, M., Sokhandan-Bashir, N., & Elbeaino, T. (2012). First report of Grapevine deformation virus and Grapevine Anatolian ring spot virus in Iran. Journal of Plant Pathology, 94(S4), 96.
- Hewitt, W.B., & Bovey, R. (1979). The viroses and virus-like diseases of the grapevine. Vitis, 18(3), 316-376.
- Margis, R., Ritzenthaler, C., Reinbolt, J., Pinck, M., & Pinck, L. (1993). Genome organization of grapevine fanleaf nepovirus RNA2 deduced from the 122K polyprotein P2 in vitro cleavage products. Journal of General Virology, 74(9), 1919-1926. https://doi.org/10.1099/0022-1317-74-9-1919
- Martelli, G.P. (2017). An overview on grapevine viruses, viroids, and the diseases they cause. p. 31-46. In: Grapevine Viruses: Molecular Biology, Diagnostics and Management. Springer International Publishing. New York.
- Martin, D.P., Varsani, A., Roumagnac, P., Botha, G., Maslamoney, S., Schwab, T., Kelz, Z., Kumar, V., & Murrell, B. (2021). RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets. Virus Evolution, 7(1), veaa087. https://doi.org/10.1093/ve/veaa087
- Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet Journal, 17(1), 10. https://doi.org/10.14806/ej.17.1.200
- Moradi, R., Koolivand, D., Eini, O., & Hajizadeh, M. (2018). Molecular identification of four important nepovirus from vineyards of Zanjan province. Iranian Journal of Plant Protection Science, 49(1), 99-110. (In Persian). https://doi.org/10.22059/ijpps.2018.246930.1006816
- Reynolds, A.G. (2017). The grapevine, viticulture, and winemaking: A brief introduction. p. 3-29. In: Meng B., Martelli G.P., Golino D.A., Fuchs M. (eds) Grapevine Viruses: Molecular Biology, Diagnostics and Management. Springer International Publishing. Cham.
- Sanfaçon, H., Iwanami, T., Karasev, A.V., van der Vlugt, R., Wellink, J., Wetzel, T., & Yoshikawa, N. (2012). Secoviridae. p. 881-899. In: King A.M.Q., Adams M.J., Carstens E.B., Lefkowitz E.J. (eds) Virus Taxonomy. Elsevier.
- Schmitt-Keichinger, C., Hemmer, C., Berthold, F., & Ritzenthaler, C. (2017). Molecular, cellular, and structural biology of Grapevine fanleaf virus. In Grapevine Viruses: Molecular Biology, Diagnostics and Management (pp. 83-107): Springer International Publishing.
- Sokhandan Bashir, N., Zarghani, S.N., & Hejazi, M.S. (2007). Diversity of Grapevine fanleaf virus isolates from Iran. Virus Research, 128(1-2), 144-148. https://doi.org/10.1016/j.virusres.2007.04.013
- Wetzel, T., Chisholm, J., Bassler, A., & Sanfacon, H. (2008). Characterization of proteinase cleavage sites in the N-terminal region of the RNA1-encoded polyprotein from Arabis mosaic virus (subgroup A nepovirus). Virology, 375(1), 159-169. https://doi.org/10.1016/j.virol.2008.01.046
- Wetzel, T., Meunier, L., Jaeger, U., Reustle, G.M., & Krczal, G. (2001). Complete nucleotide sequences of the RNAs 2 of German isolates of Grapevine fanleaf and Arabis mosaic nepoviruses. Virus Research, 75(2), 139-145. https://doi.org/10.1016/S0168-1702(01)00235-0
- Zerbino, D.R., & Birney, E. (2008). Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18(5), 821-829. https://doi.org/10.1101/gr.074492.107
|
